Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MXAN_3691Hypothetical protein; Identified by Glimmer2; putative. (354 aa)    
Predicted Functional Partners:
MXAN_3692
Sigma-54 dependent transcriptional regulator, Fis family; Identified by match to protein family HMM PF00158; match to protein family HMM PF00498; match to protein family HMM TIGR01199.
       0.773
MXAN_6419
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.640
MXAN_4396
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.576
MXAN_6423
Putative membrane protein.
  
     0.569
MXAN_3693
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF07719.
       0.565
MXAN_3159
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.550
MXAN_4440
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.547
MXAN_5913
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.534
MXAN_3854
Identified by match to protein family HMM PF01569.
  
     0.524
MXAN_0634
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.516
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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