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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspG-2General secretion pathway protein G; Identified by similarity to GB:AAD05177.1; match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532. (150 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F; Identified by similarity to GB:AAD05175.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
  
 0.935
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.922
gspD
General secretion pathway protein D; Identified by similarity to GB:AAD05173.1; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.
 
  
 0.854
gspC
General secretion pathway protein C.
 
  
 0.817
MXAN_7176
Type II secretion system protein, GspE family; Identified by similarity to GB:AAD05174.1; match to protein family HMM PF00437.
 
 
 0.774
MXAN_2658
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 
 0.743
pilC
Type 4 fimbrial assembly protein PilC; Identified by similarity to GB:AAA25733.1; similarity to GB:AAT00616.1; match to protein family HMM PF00482.
 
  
 0.737
MXAN_2506
Putative general secretion pathway protein J; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
 
 0.706
gspO
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.704
pilB
Type IV-A pilus assembly ATPase PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.
 
 
 0.693
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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