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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3904Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (395 aa)    
Predicted Functional Partners:
MXAN_3903
Efflux transporter, AcrB/AcrD/AcrF family, inner membrane component; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.965
MXAN_3922
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.926
MXAN_3905
Efflux transporter, outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
   0.890
MXAN_0667
Efflux transporter, AcrB/AcrD/AcrF family, inner membrane component; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.805
MXAN_2967
RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.803
MXAN_7240
Efflux transporter, HAE1 family, inner membrane component; Identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.803
MXAN_5032
Efflux transporter, HAE1 family, inner membrane component; Identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
 
 0.794
MXAN_0528
Efflux transporter, AcrB/AcrD/AcrF family, inner membrane component; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.772
MXAN_7238
Efflux transporter, HAE1 family, outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.735
MXAN_6177
Efflux transporter, AcrB/AcrD/AcrF family, inner membrane component; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.726
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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