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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4052Putative phytoene dehydrogenase; Identified by similarity to SP:P21685. (510 aa)    
Predicted Functional Partners:
crtB
Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.
 
 
 0.992
MXAN_0898
Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.
 
 
 0.981
crtI
Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.
  
  
0.923
carC
Phytoene dehydrogenase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM PF07992; match to protein family HMM TIGR02734.
  
  
 
0.919
MXAN_0900
Putative membrane protein.
    
  0.902
MXAN_0202
Amine oxidase, flavin-containing; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
  
     0.662
MXAN_3854
Identified by match to protein family HMM PF01569.
  
  
 0.590
MXAN_0902
Acyltransferase domain protein; Identified by match to protein family HMM PF01553.
 
   
 0.574
MXAN_4289
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.564
trpC
Indole-3-glycerol phosphate synthase; Identified by similarity to SP:P20577; match to protein family HMM PF00218; Belongs to the TrpC family.
      
 0.547
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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