STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4060Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (262 aa)    
Predicted Functional Partners:
MXAN_4059
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.560
MXAN_4061
Putative lipoprotein.
       0.539
MXAN_6479
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.535
MXAN_1726
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
    0.507
MXAN_3151
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
    0.428
MXAN_0707
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.427
MXAN_3429
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
 
0.426
MXAN_4062
Leucine-rich repeat domain protein.
       0.424
MXAN_1667
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
 
0.423
MXAN_6167
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
    0.413
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.