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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmpA-2D-aminopeptidase; Identified by similarity to GB:CAA66259.1; match to protein family HMM PF03576. (450 aa)    
Predicted Functional Partners:
MXAN_4097
D-alanine-D-alanine ligase family protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     0.778
MXAN_4095
Hypothetical protein; Identified by Glimmer2; putative.
       0.639
MXAN_5951
D-ala D-ala ligase domain protein; Identified by match to protein family HMM PF07478.
      0.591
MXAN_4099
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.516
MXAN_4098
Hypothetical protein; Identified by Glimmer2; putative.
       0.515
hemB
Porphobilinogen synthase; Identified by similarity to SP:P30950; match to protein family HMM PF00490; Belongs to the ALAD family.
       0.465
menC
Putative O-succinylbenzoic acid synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
 
     0.440
MXAN_0313
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.
 
     0.430
MXAN_0659
Putative lipoprotein; Identified by match to protein family HMM PF07969.
  
     0.430
MXAN_4101
Hypothetical protein; Identified by Glimmer2; putative.
       0.425
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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