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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4130WD domain, G-beta repeat protein; Identified by match to protein family HMM PF00400. (1399 aa)    
Predicted Functional Partners:
MXAN_5493
WD domain G-beta repeat protein; Identified by match to protein family HMM PF00400.
  
     0.760
MXAN_4959
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
  0.649
MXAN_2142
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.619
MXAN_5216
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.607
MXAN_3999
Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01520.
 
     0.592
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.586
MXAN_3932
Polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 0.554
MXAN_4131
Hypothetical protein; Identified by Glimmer2; putative.
       0.538
MXAN_0906
Putative serine/threonine protein kinase; Identified by match to protein family HMM PF00069; match to protein family HMM PF03781.
    0.522
MXAN_4129
Hypothetical protein; Identified by Glimmer2; putative.
       0.520
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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