MXAN_4145 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_4145

Radical SAM domain protein; Identified by match to protein family HMM PF04055. (450 aa)

Predicted Functional Partners:

pcm

0.562

ald

0.545

MXAN_2984

0.540

MXAN_3707

0.487

MXAN_5773

0.438

holA

0.434

MXAN_2637

0.433

MXAN_2834

0.409

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_2637	MXAN_4145	MXAN_2637	MXAN_4145	Hypothetical protein; Identified by Glimmer2; putative.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.433
MXAN_2834	MXAN_4145	MXAN_2834	MXAN_4145	Hypothetical protein; Identified by Glimmer2; putative.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.409
MXAN_2984	MXAN_4145	MXAN_2984	MXAN_4145	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.540
MXAN_2984	MXAN_5773	MXAN_2984	MXAN_5773	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	Putative lipoprotein.	0.542
MXAN_3707	MXAN_4145	MXAN_3707	MXAN_4145	Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.487
MXAN_4145	MXAN_2637	MXAN_4145	MXAN_2637	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Hypothetical protein; Identified by Glimmer2; putative.	0.433
MXAN_4145	MXAN_2834	MXAN_4145	MXAN_2834	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Hypothetical protein; Identified by Glimmer2; putative.	0.409
MXAN_4145	MXAN_2984	MXAN_4145	MXAN_2984	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.540
MXAN_4145	MXAN_3707	MXAN_4145	MXAN_3707	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Hypothetical protein; Specifically methylates the guanosine in position 1516 of 16S rRNA.	0.487
MXAN_4145	MXAN_5773	MXAN_4145	MXAN_5773	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Putative lipoprotein.	0.438
MXAN_4145	ald	MXAN_4145	MXAN_4146	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family.	0.545
MXAN_4145	holA	MXAN_4145	MXAN_2801	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.	0.434
MXAN_4145	pcm	MXAN_4145	MXAN_3407	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.	0.562
MXAN_5773	MXAN_2984	MXAN_5773	MXAN_2984	Putative lipoprotein.	DHH family/DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272.	0.542
MXAN_5773	MXAN_4145	MXAN_5773	MXAN_4145	Putative lipoprotein.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.438
MXAN_5773	holA	MXAN_5773	MXAN_2801	Putative lipoprotein.	DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.	0.594
ald	MXAN_4145	MXAN_4146	MXAN_4145	Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.545
holA	MXAN_4145	MXAN_2801	MXAN_4145	DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.434
holA	MXAN_5773	MXAN_2801	MXAN_5773	DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.	Putative lipoprotein.	0.594
pcm	MXAN_4145	MXAN_3407	MXAN_4145	protein-L-isoaspartate(D-aspartate) O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.562