STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4239Hypothetical protein; Identified by Glimmer2; putative. (165 aa)    
Predicted Functional Partners:
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.717
otsAB
Alpha,alpha-trehalose-phosphate synthase/trehalose-phosphatase; Identified by match to protein family HMM PF00982; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484.
   
    0.701
MXAN_4240
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
       0.682
MXAN_4241
Hypothetical protein; Identified by Glimmer2; putative.
       0.663
MXAN_6937
Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
  
 0.578
MXAN_0866
Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.
  
  
 0.573
MXAN_1562
Dps family protein; Identified by similarity to PDB:1O9R_A; match to protein family HMM PF00210; Belongs to the Dps family.
  
  
 0.573
MXAN_1098
Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00248.
  
  
 0.560
MXAN_4242
Putative transcriptional regulator; Identified by similarity to SP:P06555; match to protein family HMM PF03965.
       0.545
MXAN_4243
Hypothetical protein; Identified by Glimmer2; putative.
       0.545
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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