STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4264Glutaconate CoA-transferase family, subunit A; Identified by match to protein family HMM PF01144. (265 aa)    
Predicted Functional Partners:
MXAN_4265
Glutaconate CoA-transferase family, subunit B; Identified by similarity to GB:AAL02406.1.
 
 0.999
MXAN_3789
3-oxoacid CoA-transferase family, subunit B; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428.
 
 
 0.935
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
   
 
  0.901
MXAN_2852
Identified by match to protein family HMM PF01425; Belongs to the amidase family.
     
  0.900
MXAN_3566
Amidase; Identified by match to protein family HMM PF01425; match to protein family HMM TIGR01409.
     
  0.900
MXAN_4266
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
  
  
 0.872
MXAN_4263
Transcriptional regulator, TetR family; Identified by similarity to GB:AAL28105.1; match to protein family HMM PF00440.
 
     0.800
mvaS
hydroxymethylglutaryl-CoA synthase; Identified by similarity to GB:AAG02422.1; match to protein family HMM PF01154.
     
 0.753
accC
acetyl-CoA carboxylase, biotin carboxylase; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514.
  
  
 0.681
MXAN_4261
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
       0.522
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.