STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4265Glutaconate CoA-transferase family, subunit B; Identified by similarity to GB:AAL02406.1. (246 aa)    
Predicted Functional Partners:
MXAN_4264
Glutaconate CoA-transferase family, subunit A; Identified by match to protein family HMM PF01144.
 
 0.999
MXAN_2852
Identified by match to protein family HMM PF01425; Belongs to the amidase family.
    
  0.902
nylA
6-aminohexanoate-cyclic-dimer hydrolase; Identified by similarity to SP:P13397; match to protein family HMM PF01425; Belongs to the amidase family.
    
  0.902
MXAN_3566
Amidase; Identified by match to protein family HMM PF01425; match to protein family HMM TIGR01409.
     
  0.900
MXAN_3790
3-oxoacid CoA-transferase family, subunit A; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429.
  
 
 0.874
MXAN_4263
Transcriptional regulator, TetR family; Identified by similarity to GB:AAL28105.1; match to protein family HMM PF00440.
 
     0.806
MXAN_4266
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
     
 0.779
MXAN_4308
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.594
accC
acetyl-CoA carboxylase, biotin carboxylase; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514.
  
 
 0.579
MXAN_4565
2-oxoisovalerate dehydrogenase complex, E1 component, beta subunit; Identified by similarity to SP:P37941; match to protein family HMM PF02779; match to protein family HMM PF02780.
  
  
 0.545
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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