Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4269Conserved hypothetical protein; Identified by match to protein family HMM TIGR02246. (171 aa)    
Predicted Functional Partners:
MXAN_4268
Heat shock protein, HSP20 family; Identified by similarity to SP:Q06823; match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
       0.545
MXAN_2614
Identified by match to protein family HMM PF01569.
 
    0.471
MXAN_7382
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0312 family.
  
     0.455
MXAN_7190
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.437
MXAN_1237
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.419
MXAN_2398
Conserved hypothetical protein; Identified by match to protein family HMM PF07812.
  
     0.415
MXAN_3659
Identified by match to protein family HMM PF00903.
 
     0.414
MXAN_6004
Conserved hypothetical protein.
  
     0.403
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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