MXAN_4278 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_4278

LysM domain protein; Identified by match to protein family HMM PF01476. (232 aa)

Predicted Functional Partners:

MXAN_6423

0.599

MXAN_4440

0.580

MXAN_2010

0.545

MXAN_2186

0.536

MXAN_4396

0.515

MXAN_6419

0.510

MXAN_2477

0.470

MXAN_2445

0.465

MXAN_4279

0.463

MXAN_4280

0.463

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_2010	MXAN_2186	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	B12 binding domain protein; Identified by match to protein family HMM PF02310.	0.762
MXAN_2010	MXAN_2477	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	Putative membrane protein.	0.753
MXAN_2010	MXAN_4278	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.545
MXAN_2010	MXAN_4396	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	Hypothetical protein; Identified by Glimmer2; putative.	0.769
MXAN_2010	MXAN_4440	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	Hypothetical protein; Identified by Glimmer2; putative.	0.768
MXAN_2010	MXAN_6419	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.772
MXAN_2010	MXAN_6423	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	Putative membrane protein.	0.771
MXAN_2186	MXAN_2010	B12 binding domain protein; Identified by match to protein family HMM PF02310.	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	0.762
MXAN_2186	MXAN_2477	B12 binding domain protein; Identified by match to protein family HMM PF02310.	Putative membrane protein.	0.770
MXAN_2186	MXAN_4278	B12 binding domain protein; Identified by match to protein family HMM PF02310.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.536
MXAN_2186	MXAN_4396	B12 binding domain protein; Identified by match to protein family HMM PF02310.	Hypothetical protein; Identified by Glimmer2; putative.	0.774
MXAN_2186	MXAN_4440	B12 binding domain protein; Identified by match to protein family HMM PF02310.	Hypothetical protein; Identified by Glimmer2; putative.	0.774
MXAN_2186	MXAN_6419	B12 binding domain protein; Identified by match to protein family HMM PF02310.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.774
MXAN_2186	MXAN_6423	B12 binding domain protein; Identified by match to protein family HMM PF02310.	Putative membrane protein.	0.774
MXAN_2445	MXAN_4278	Type III secretion system apparatus protein YscQ/HrcQ; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.465
MXAN_2445	MXAN_6419	Type III secretion system apparatus protein YscQ/HrcQ; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.525
MXAN_2477	MXAN_2010	Putative membrane protein.	Phage recombination protein Bet; Identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913.	0.753
MXAN_2477	MXAN_2186	Putative membrane protein.	B12 binding domain protein; Identified by match to protein family HMM PF02310.	0.770
MXAN_2477	MXAN_4278	Putative membrane protein.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.470
MXAN_2477	MXAN_4396	Putative membrane protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.774