STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4385beta-alanyl-CoA:ammonia lyase; Identified by similarity to GB:CAG29275.1. (132 aa)    
Predicted Functional Partners:
MXAN_4384
Conserved hypothetical protein; Identified by similarity to GB:AAM23981.1; match to protein family HMM PF05853.
  
 0.999
kamE
D-lysine 5,6-aminomutase, beta subunit; Identified by similarity to GB:AAC79718.1; match to protein family HMM PF02310.
 
   
 0.952
kamD
D-lysine 5,6-aminomutase, alpha subunit; Identified by similarity to GB:AAC79717.1.
 
  
 0.951
fadJ
Fatty oxidation complex, alpha subunit FadJ; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM TIGR02440; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.929
fadJ-2
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737.
  
 0.929
MXAN_2034
Identified by match to protein family HMM PF00378.
   
 0.909
MXAN_5841
Identified by match to protein family HMM PF00378.
   
 0.909
MXAN_4391
Conserved hypothetical protein; Identified by similarity to GB:AAM23984.1.
 
 
   0.795
MXAN_4387
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.774
MXAN_4699
Putative L-lysine 2,3-aminomutase; Identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238.
 
  
 0.700
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
Server load: low (26%) [HD]