close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamED-lysine 5,6-aminomutase, beta subunit; Identified by similarity to GB:AAC79718.1; match to protein family HMM PF02310. (261 aa)    
Predicted Functional Partners:
kamD
D-lysine 5,6-aminomutase, alpha subunit; Identified by similarity to GB:AAC79717.1.
  
  0.999
MXAN_4391
Conserved hypothetical protein; Identified by similarity to GB:AAM23984.1.
 
 
 0.979
MXAN_4699
Putative L-lysine 2,3-aminomutase; Identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238.
 
  
 0.971
kamA
L-lysine 2,3-aminomutase; Identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238.
 
  
 0.953
MXAN_4384
Conserved hypothetical protein; Identified by similarity to GB:AAM23981.1; match to protein family HMM PF05853.
 
   
 0.952
MXAN_4385
beta-alanyl-CoA:ammonia lyase; Identified by similarity to GB:CAG29275.1.
 
   
 0.952
MXAN_4674
Conserved hypothetical protein; Identified by similarity to GB:AAM24461.1; match to protein family HMM PF01113.
 
 
  0.948
MXAN_4387
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 
 0.509
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.460
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.