MXAN_4411 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_4411

JmjC domain protein; Identified by match to protein family HMM PF02373. (295 aa)

Predicted Functional Partners:

MXAN_0100

0.616

MXAN_4412

0.593

purB

0.554

trmD

0.522

MXAN_6854

0.465

MXAN_4413

0.453

MXAN_3709

0.439

MXAN_1744

0.420

trmU

0.414

MXAN_3623

0.410

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0100	MXAN_4411	MXAN_0100	MXAN_4411	Peptidase, M28D (aminopeptidase ES-62) subfamily; Identified by similarity to GB:AAC28365.1; similarity to GB:AAD31418.1; match to protein family HMM PF01546; match to protein family HMM PF04389.	JmjC domain protein; Identified by match to protein family HMM PF02373.	0.616
MXAN_1744	MXAN_3623	MXAN_1744	MXAN_3623	Identified by match to protein family HMM PF00305; match to protein family HMM PF01477.	Putative glutathione S-transferase; Identified by similarity to SP:P04903; match to protein family HMM PF00043; match to protein family HMM PF02798.	0.621
MXAN_1744	MXAN_4411	MXAN_1744	MXAN_4411	Identified by match to protein family HMM PF00305; match to protein family HMM PF01477.	JmjC domain protein; Identified by match to protein family HMM PF02373.	0.420
MXAN_3623	MXAN_1744	MXAN_3623	MXAN_1744	Putative glutathione S-transferase; Identified by similarity to SP:P04903; match to protein family HMM PF00043; match to protein family HMM PF02798.	Identified by match to protein family HMM PF00305; match to protein family HMM PF01477.	0.621
MXAN_3623	MXAN_3709	MXAN_3623	MXAN_3709	Putative glutathione S-transferase; Identified by similarity to SP:P04903; match to protein family HMM PF00043; match to protein family HMM PF02798.	HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; Identified by similarity to GB:AAC48784.1; match to protein family HMM PF05761; match to protein family HMM TIGR02244.	0.537
MXAN_3623	MXAN_4411	MXAN_3623	MXAN_4411	Putative glutathione S-transferase; Identified by similarity to SP:P04903; match to protein family HMM PF00043; match to protein family HMM PF02798.	JmjC domain protein; Identified by match to protein family HMM PF02373.	0.410
MXAN_3709	MXAN_3623	MXAN_3709	MXAN_3623	HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; Identified by similarity to GB:AAC48784.1; match to protein family HMM PF05761; match to protein family HMM TIGR02244.	Putative glutathione S-transferase; Identified by similarity to SP:P04903; match to protein family HMM PF00043; match to protein family HMM PF02798.	0.537
MXAN_3709	MXAN_4411	MXAN_3709	MXAN_4411	HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; Identified by similarity to GB:AAC48784.1; match to protein family HMM PF05761; match to protein family HMM TIGR02244.	JmjC domain protein; Identified by match to protein family HMM PF02373.	0.439
MXAN_3709	MXAN_6854	MXAN_3709	MXAN_6854	HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; Identified by similarity to GB:AAC48784.1; match to protein family HMM PF05761; match to protein family HMM TIGR02244.	Conserved hypothetical protein; Identified by similarity to GB:AAP68290.1.	0.692
MXAN_4411	MXAN_0100	MXAN_4411	MXAN_0100	JmjC domain protein; Identified by match to protein family HMM PF02373.	Peptidase, M28D (aminopeptidase ES-62) subfamily; Identified by similarity to GB:AAC28365.1; similarity to GB:AAD31418.1; match to protein family HMM PF01546; match to protein family HMM PF04389.	0.616
MXAN_4411	MXAN_1744	MXAN_4411	MXAN_1744	JmjC domain protein; Identified by match to protein family HMM PF02373.	Identified by match to protein family HMM PF00305; match to protein family HMM PF01477.	0.420
MXAN_4411	MXAN_3623	MXAN_4411	MXAN_3623	JmjC domain protein; Identified by match to protein family HMM PF02373.	Putative glutathione S-transferase; Identified by similarity to SP:P04903; match to protein family HMM PF00043; match to protein family HMM PF02798.	0.410
MXAN_4411	MXAN_3709	MXAN_4411	MXAN_3709	JmjC domain protein; Identified by match to protein family HMM PF02373.	HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; Identified by similarity to GB:AAC48784.1; match to protein family HMM PF05761; match to protein family HMM TIGR02244.	0.439
MXAN_4411	MXAN_4412	MXAN_4411	MXAN_4412	JmjC domain protein; Identified by match to protein family HMM PF02373.	Hypothetical protein; Identified by Glimmer2; putative.	0.593
MXAN_4411	MXAN_4413	MXAN_4411	MXAN_4413	JmjC domain protein; Identified by match to protein family HMM PF02373.	Hypothetical protein; Identified by Glimmer2; putative.	0.453
MXAN_4411	MXAN_6854	MXAN_4411	MXAN_6854	JmjC domain protein; Identified by match to protein family HMM PF02373.	Conserved hypothetical protein; Identified by similarity to GB:AAP68290.1.	0.465
MXAN_4411	purB	MXAN_4411	MXAN_2079	JmjC domain protein; Identified by match to protein family HMM PF02373.	Adenylosuccinate lyase; Identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.554
MXAN_4411	trmD	MXAN_4411	MXAN_3548	JmjC domain protein; Identified by match to protein family HMM PF02373.	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.522
MXAN_4411	trmU	MXAN_4411	MXAN_3499	JmjC domain protein; Identified by match to protein family HMM PF02373.	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.	0.414
MXAN_4412	MXAN_4411	MXAN_4412	MXAN_4411	Hypothetical protein; Identified by Glimmer2; putative.	JmjC domain protein; Identified by match to protein family HMM PF02373.	0.593