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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4437Identified by match to protein family HMM PF00903. (128 aa)    
Predicted Functional Partners:
MXAN_4155
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.734
MXAN_1162
Putative lipoprotein.
  
     0.702
agmK
Adventurous gliding motility protein AgmK; Identified by similarity to GB:AAO22907.1; match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.676
MXAN_7193
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.670
MXAN_1193
Conserved domain protein; Identified by similarity to GB:AAM41262.1; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
     0.663
MXAN_4097
D-alanine-D-alanine ligase family protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
     0.655
MXAN_4627
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01987.
 
    0.631
MXAN_0869
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.622
MXAN_2706
Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.
  
     0.620
MXAN_3201
FHA domain protein; Identified by match to protein family HMM PF00498.
  
    0.618
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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