rfbB-2 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

rfbB-2

O-antigen ABC exporter, ATP-binding protein; Identified by similarity to SP:Q50863; match to protein family HMM PF00005. (437 aa)

Predicted Functional Partners:

rfbA-2

0.999

MXAN_4621

0.969

MXAN_4619

0.906

MXAN_2919

0.853

MXAN_2922

0.792

MXAN_4616

0.722

MXAN_4620

0.662

MXAN_1915

0.653

MXAN_3225

0.653

MXAN_7417

0.651

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1915	MXAN_2919	MXAN_1915	MXAN_2919	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF04932.	0.411
MXAN_1915	MXAN_2922	MXAN_1915	MXAN_2922	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM PF02629.	0.948
MXAN_1915	MXAN_3225	MXAN_1915	MXAN_3225	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.916
MXAN_1915	MXAN_4616	MXAN_1915	MXAN_4616	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.452
MXAN_1915	MXAN_4619	MXAN_1915	MXAN_4619	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.523
MXAN_1915	MXAN_4621	MXAN_1915	MXAN_4621	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.733
MXAN_1915	MXAN_7417	MXAN_1915	MXAN_7417	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.924
MXAN_1915	rfbA-2	MXAN_1915	MXAN_4623	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	O-antigen ABC exporter, permease protein; Identified by similarity to SP:Q50862; match to protein family HMM PF01061.	0.651
MXAN_1915	rfbB-2	MXAN_1915	MXAN_4622	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	O-antigen ABC exporter, ATP-binding protein; Identified by similarity to SP:Q50863; match to protein family HMM PF00005.	0.653
MXAN_2919	MXAN_1915	MXAN_2919	MXAN_1915	Identified by match to protein family HMM PF04932.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.411
MXAN_2919	MXAN_2922	MXAN_2919	MXAN_2922	Identified by match to protein family HMM PF04932.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM PF02629.	0.946
MXAN_2919	MXAN_3225	MXAN_2919	MXAN_3225	Identified by match to protein family HMM PF04932.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.411
MXAN_2919	MXAN_4621	MXAN_2919	MXAN_4621	Identified by match to protein family HMM PF04932.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.692
MXAN_2919	MXAN_7417	MXAN_2919	MXAN_7417	Identified by match to protein family HMM PF04932.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.411
MXAN_2919	rfbA-2	MXAN_2919	MXAN_4623	Identified by match to protein family HMM PF04932.	O-antigen ABC exporter, permease protein; Identified by similarity to SP:Q50862; match to protein family HMM PF01061.	0.765
MXAN_2919	rfbB-2	MXAN_2919	MXAN_4622	Identified by match to protein family HMM PF04932.	O-antigen ABC exporter, ATP-binding protein; Identified by similarity to SP:Q50863; match to protein family HMM PF00005.	0.853
MXAN_2922	MXAN_1915	MXAN_2922	MXAN_1915	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM PF02629.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.948
MXAN_2922	MXAN_2919	MXAN_2922	MXAN_2919	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM PF02629.	Identified by match to protein family HMM PF04932.	0.946
MXAN_2922	MXAN_3225	MXAN_2922	MXAN_3225	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM PF02629.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.953
MXAN_2922	MXAN_4616	MXAN_2922	MXAN_4616	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM PF02629.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.870