rfbA-2 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rfbA-2

O-antigen ABC exporter, permease protein; Identified by similarity to SP:Q50862; match to protein family HMM PF01061. (260 aa)

Predicted Functional Partners:

rfbB-2

0.999

MXAN_4621

0.974

MXAN_4619

0.890

MXAN_2919

0.765

MXAN_1036

0.730

MXAN_4620

0.703

MXAN_4616

0.661

MXAN_1915

0.651

MXAN_3225

0.651

MXAN_7417

0.651

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_1036	MXAN_1915	MXAN_1036	MXAN_1915	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.513
MXAN_1036	MXAN_4616	MXAN_1036	MXAN_4616	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.410
MXAN_1036	MXAN_4619	MXAN_1036	MXAN_4619	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.446
MXAN_1036	MXAN_4621	MXAN_1036	MXAN_4621	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.414
MXAN_1036	rfbA-2	MXAN_1036	MXAN_4623	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	O-antigen ABC exporter, permease protein; Identified by similarity to SP:Q50862; match to protein family HMM PF01061.	0.730
MXAN_1036	rfbB-2	MXAN_1036	MXAN_4622	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	O-antigen ABC exporter, ATP-binding protein; Identified by similarity to SP:Q50863; match to protein family HMM PF00005.	0.557
MXAN_1915	MXAN_1036	MXAN_1915	MXAN_1036	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.513
MXAN_1915	MXAN_2919	MXAN_1915	MXAN_2919	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF04932.	0.411
MXAN_1915	MXAN_3225	MXAN_1915	MXAN_3225	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.916
MXAN_1915	MXAN_4616	MXAN_1915	MXAN_4616	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.452
MXAN_1915	MXAN_4619	MXAN_1915	MXAN_4619	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.523
MXAN_1915	MXAN_4621	MXAN_1915	MXAN_4621	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.733
MXAN_1915	MXAN_7417	MXAN_1915	MXAN_7417	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.924
MXAN_1915	rfbA-2	MXAN_1915	MXAN_4623	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	O-antigen ABC exporter, permease protein; Identified by similarity to SP:Q50862; match to protein family HMM PF01061.	0.651
MXAN_1915	rfbB-2	MXAN_1915	MXAN_4622	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	O-antigen ABC exporter, ATP-binding protein; Identified by similarity to SP:Q50863; match to protein family HMM PF00005.	0.653
MXAN_2919	MXAN_1915	MXAN_2919	MXAN_1915	Identified by match to protein family HMM PF04932.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.411
MXAN_2919	MXAN_3225	MXAN_2919	MXAN_3225	Identified by match to protein family HMM PF04932.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.411
MXAN_2919	MXAN_4621	MXAN_2919	MXAN_4621	Identified by match to protein family HMM PF04932.	Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.692
MXAN_2919	MXAN_7417	MXAN_2919	MXAN_7417	Identified by match to protein family HMM PF04932.	Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.	0.411
MXAN_2919	rfbA-2	MXAN_2919	MXAN_4623	Identified by match to protein family HMM PF04932.	O-antigen ABC exporter, permease protein; Identified by similarity to SP:Q50862; match to protein family HMM PF01061.	0.765