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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4648FHA domain protein; Identified by match to protein family HMM PF00498. (581 aa)    
Predicted Functional Partners:
MXAN_3102
Putative lipoprotein.
      
 0.806
MXAN_4649
FHA domain protein; Identified by match to protein family HMM PF00498.
 
   
0.784
MXAN_3404
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.764
MXAN_3104
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.755
MXAN_2257
FHA domain protein; Identified by match to protein family HMM PF00498.
  
    0.752
MXAN_4658
Pilus biogenesis protein, TadE family; Identified by match to protein family HMM PF07811.
     
 0.718
MXAN_4660
Pilus biogenesis protein, TadE family; Identified by match to protein family HMM PF07811.
     
 0.714
MXAN_4651
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
    0.696
MXAN_4650
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
       0.695
MXAN_6571
FHA/GAF domain protein; Identified by match to protein family HMM PF00498.
 
    0.647
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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