STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4708Conserved hypothetical protein; Identified by similarity to GB:CAB88911.1. (55 aa)    
Predicted Functional Partners:
MXAN_4709
D-beta-D-heptose 1-phosphate adenosyltransferase; Identified by similarity to SP:P76658; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
       0.719
MXAN_4710
D-beta-D-heptose 7-phosphate kinase; Identified by similarity to SP:P76658; match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.
       0.719
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.602
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.602
MXAN_4712
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
       0.546
MXAN_4713
Putative lipopolysaccharide core biosynthesis mannosyltransferase; Identified by similarity to SP:O68547; match to protein family HMM PF00534.
       0.546
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.531
MXAN_4715
PHP domain protein; Identified by match to protein family HMM PF02811.
       0.530
MXAN_4716
Putative ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.499
MXAN_4717
Response regulator/DnaJ domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00226; match to protein family HMM PF07719.
       0.481
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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