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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4722Identified by match to protein family HMM PF00691. (386 aa)    
Predicted Functional Partners:
MXAN_4721
Putative lipoprotein.
       0.682
MXAN_4727
Outer membrane protein, OmpH family; Identified by match to protein family HMM PF03938.
  
 
 0.617
tpx
Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
   
  
 0.600
aglU
Adventurous gliding motility protein AglU; Identified by similarity to GB:AAO22920.1.
 
   0.597
MXAN_2878
Putative bacterioferritin; Identified by match to protein family HMM PF00210; match to protein family HMM PF02915.
  
  
 0.552
MXAN_0562
Phosphate-selective porin O and P; Identified by match to protein family HMM PF07396.
   
  
 0.543
dofB
dofB protein; Identified by similarity to GB:BAC41252.1.
      
 0.540
MXAN_3374
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
 
  
 0.539
MXAN_0455
Conserved domain protein; Identified by similarity to GB:AAO76334.1.
  
   0.537
MXAN_3852
Patatin-like phospholipase family; Identified by match to protein family HMM PF01734.
      
 0.531
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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