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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4747Putative lipoprotein. (447 aa)    
Predicted Functional Partners:
MXAN_4746
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   0.960
MXAN_7127
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
    0.697
MXAN_3810
Hydrolase, CocE/NonD family; Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976.
  
     0.663
MXAN_1845
Putative phage late control gene D protein.
 
 
   0.655
MXAN_1883
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.627
MXAN_0221
Lipase; Identified by match to protein family HMM PF01674.
  
     0.626
MXAN_1853
Heme-binding protein.
  
 
   0.597
MXAN_4308
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.585
MXAN_1848
Phage tail tape measure protein, TP901 family, core region; Identified by match to protein family HMM TIGR01760.
  
     0.578
MXAN_1840
Conserved domain protein; Identified by similarity to GB:BAC89353.1.
 
 
   0.573
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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