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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheYChemotaxis protein CheY; Identified by similarity to SP:P71403; match to protein family HMM PF00072. (126 aa)    
Predicted Functional Partners:
MXAN_6012
Response regulator; Identified by match to protein family HMM PF00072.
  
 
  0.971
cheY-2
Chemotaxis protein CheY; Identified by similarity to SP:P71403; match to protein family HMM PF00072.
 
 
 
0.954
MXAN_6968
Response regulator; Identified by match to protein family HMM PF00072.
  
  
 
0.923
MXAN_0259
Response regulator; Identified by match to protein family HMM PF00072.
  
  
 
0.921
difG
Fibril biogenesis regulator DifG; Truncated at the N-terminus. Starts with a GTG about 35 codons upstream (Zhaomin); identified by similarity to GB:AAP97128.1; match to protein family HMM PF04509.
  
 
 0.921
difD
Fibril biogenesis regulator DifD; Identified by similarity to GB:AAC27631.1; match to protein family HMM PF00072.
  
  
 
0.918
MXAN_6033
Putative chemotaxis protein CheY; Identified by match to protein family HMM PF00072.
  
  
 
0.917
MXAN_6046
Response regulator; Identified by match to protein family HMM PF00072.
  
 
 
0.916
cheA
Chemotaxis protein CheA; Identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 
  0.912
MXAN_6965
Putative chemotaxis protein CheY; Identified by match to protein family HMM PF00072.
  
  
 
0.912
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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