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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4799OmpA domain protein; Identified by match to protein family HMM PF00691; match to protein family HMM PF02412. (615 aa)    
Predicted Functional Partners:
MXAN_3163
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.740
MXAN_4798
Conserved domain protein.
   
   0.703
MXAN_5026
Vitamin K-dependent gamma-carboxylase-related protein; Identified by similarity to SP:Q07175.
 
    0.617
MXAN_4800
Rhs element Vgr family protein; Identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646.
       0.470
MXAN_4722
Identified by match to protein family HMM PF00691.
  
     0.459
MXAN_0855
Putative chemotaxis protein MotB; Identified by match to protein family HMM PF00691.
  
 
0.446
MXAN_7037
Putative chemotaxis MotB protein; Identified by match to protein family HMM PF00691.
  
 
0.444
MXAN_4604
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.436
MXAN_3626
Conserved hypothetical protein; Identified by match to protein family HMM PF02373.
  
    0.429
tolB
Tol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF07676.
  
 
 0.426
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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