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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4958Identified by match to protein family HMM PF01381; match to protein family HMM PF06114. (539 aa)    
Predicted Functional Partners:
aceA
Isocitrate lyase; Identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346.
 
   
 0.773
MXAN_4959
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
       0.762
MXAN_2241
Putative helicase; Identified by similarity to GB:CAA90562.1; match to protein family HMM PF00271.
  
     0.585
MXAN_4957
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.557
MXAN_4956
Hypothetical protein; Identified by Glimmer2; putative.
       0.488
MXAN_4606
Identified by match to protein family HMM PF02018.
  
     0.417
MXAN_6105
Identified by match to protein family HMM PF00149.
  
     0.415
MXAN_0869
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.414
MXAN_6735
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518.
  
 
 0.414
MXAN_0787
Helicase, DEAD/DEAH family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01230; match to protein family HMM PF04851; Belongs to the peptidase S24 family.
     
 0.411
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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