Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_4990Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (188 aa)    
Predicted Functional Partners:
MXAN_6252
Identified by match to protein family HMM PF00903.
  
     0.672
MXAN_4991
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
       0.661
MXAN_6251
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.632
MXAN_4989
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
     0.605
MXAN_1729
Conserved hypothetical protein; Identified by similarity to GB:AAK22213.1; Belongs to the UPF0386 family.
  
     0.580
MXAN_3578
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
     0.564
MXAN_4992
Putative transcriptional regulator; Identified by match to protein family HMM PF08220.
 
     0.550
MXAN_2554
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
     0.491
MXAN_4988
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
       0.489
MXAN_4531
Conserved hypothetical protein.
  
     0.446
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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