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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (352 aa)    
Predicted Functional Partners:
mvaD
Diphosphomevalonate decarboxylase; Identified by match to protein family HMM PF00288; match to protein family HMM TIGR01240.
 
  
 0.998
MXAN_5020
hydroxymethylglutaryl-CoA reductase; Identified by match to protein family HMM PF00368; match to protein family HMM TIGR00532; Belongs to the HMG-CoA reductase family.
   
 0.967
mvk
Mevalonate kinase; Identified by similarity to GB:AAG02440.1; match to protein family HMM PF00288; match to protein family HMM TIGR00549.
 
  
 0.942
MXAN_0894
Putative farnesyltranstransferase; Identified by similarity to GB:CAA79955.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
 
 0.932
crtE
Geranylgeranyl diphosphate synthase; Identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
  
 
 0.929
MXAN_5017
Putative phosphomevalonate kinase; Identified by similarity to GB:BAB07792.1; match to protein family HMM PF00288.
 
  
 0.882
MXAN_3653
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913.
  
 0.792
mvaS
hydroxymethylglutaryl-CoA synthase; Identified by similarity to GB:AAG02422.1; match to protein family HMM PF01154.
 
  
 0.696
MXAN_0256
Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
  
 0.673
aceB
Malate synthase A; Identified by match to protein family HMM PF01274; match to protein family HMM TIGR01344.
  
  
 0.604
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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