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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5041Sigma-54 dependent transcriptional regulator, Fis family; Identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199. (737 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.820
MXAN_0618
Identified by match to protein family HMM PF02733; match to protein family HMM PF02734.
   
 
 0.714
MXAN_5039
Conserved hypothetical protein; Identified by match to protein family HMM PF05610.
 
     0.598
MXAN_5040
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 
 0.558
MXAN_5042
OmpA domain protein; Identified by match to protein family HMM PF00691; match to protein family HMM PF02412.
  
    0.518
MXAN_5043
Putative lipoprotein; Identified by match to protein family HMM TIGR02232.
       0.478
MXAN_5044
Putative cell wall surface anchor family protein.
       0.441
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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