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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5089Hypothetical protein; Identified by Glimmer2; putative. (104 aa)    
Predicted Functional Partners:
MXAN_5088
Hypothetical protein; Identified by Glimmer2; putative.
       0.781
MXAN_5090
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.714
MXAN_5727
Conserved hypothetical protein; Identified by similarity to GB:AAS95933.1; match to protein family HMM PF02591.
  
     0.650
MXAN_3770
Conserved hypothetical protein.
  
     0.614
MXAN_4730
Lipoprotein releasing system, transmembrane protein, LolC/E family; Identified by match to protein family HMM PF02687.
  
     0.609
MXAN_3132
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.606
MXAN_4728
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
     0.603
MXAN_2627
Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559.
 
     0.589
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
  
    0.588
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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