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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5117Conserved hypothetical protein; Identified by similarity to PIR:D75349; Belongs to the methyltransferase superfamily. (328 aa)    
Predicted Functional Partners:
MXAN_6018
Identified by match to protein family HMM PF01170.
  
 0.926
MXAN_1458
THUMP domain/methyltransferase domain protein; Identified by match to protein family HMM PF01170; match to protein family HMM PF02926; Belongs to the methyltransferase superfamily.
  
 0.915
MXAN_5118
Amidohydrolase domain protein; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
       0.778
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.583
MXAN_5116
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
       0.568
MXAN_5119
Putative membrane protein.
       0.552
MXAN_5114
Hypothetical protein; Identified by Glimmer2; putative.
       0.528
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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