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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5121Hypothetical protein; Identified by Glimmer2; putative. (97 aa)    
Predicted Functional Partners:
MXAN_4652
Putative Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF06981.
  
  
 0.795
MXAN_3106
Protein transporter, outer bacterial membrane secretin (secretin) family; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
  
  
 0.634
MXAN_4650
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
  
 0.514
MXAN_4651
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
  
 0.514
MXAN_5122
Identified by match to protein family HMM PF01564.
       0.496
tipA
Transcriptional activator TipA; Identified by similarity to SP:P32184; match to protein family HMM PF00376; match to protein family HMM PF07739.
       0.463
MXAN_3107
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF00498.
  
  
 0.448
MXAN_0759
Type II/IV secretion system ATPase, TadA family; Identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437.
  
  
 0.435
mrpB
Sigma-54 dependent DNA-binding response regulator MrpB; Identified by similarity to GB:AAF99325.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
  
    0.433
MXAN_0354
Pilus biogenesis protein, TadE family; Identified by match to protein family HMM PF07811.
  
  
 0.429
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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