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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5133Conserved domain protein; Identified by similarity to GB:AAL86957.1. (383 aa)    
Predicted Functional Partners:
MXAN_6903
Identified by match to protein family HMM PF02274.
  
     0.630
MXAN_4918
Transposase, IS630 family; Identified by similarity to GB:AAP70294.1.
  
     0.625
MXAN_3805
Transposase, IS630 family; Identified by similarity to GB:AAP70294.1.
  
     0.618
MXAN_3463
Fatty acid desaturase; Identified by match to protein family HMM PF00487.
  
     0.615
MXAN_2218
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
  
     0.578
MXAN_5134
mutS domain protein; Identified by match to protein family HMM PF00488; Belongs to the DNA mismatch repair MutS family.
       0.568
MXAN_0946
jmjC domain protein; Identified by match to protein family HMM PF02373.
  
     0.561
MXAN_6235
Transposase, IS630 family, truncated.
  
     0.558
MXAN_2322
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.520
MXAN_1142
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.509
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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