STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5191Hypothetical protein; Identified by Glimmer2; putative. (321 aa)    
Predicted Functional Partners:
MXAN_5192
PBS lyase HEAT repeat-like domain protein; Identified by match to protein family HMM PF03130.
 
    0.841
MXAN_2908
Putative lipoprotein.
  
     0.712
MXAN_5975
Putative lipoprotein.
  
     0.710
MXAN_3374
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
  
     0.690
MXAN_2610
Putative lipoprotein.
  
     0.659
MXAN_1344
Conserved hypothetical protein; Identified by similarity to GB:AAN54036.1.
  
     0.649
MXAN_4864
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.621
aglU
Adventurous gliding motility protein AglU; Identified by similarity to GB:AAO22920.1.
 
     0.596
MXAN_4870
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
  
     0.583
MXAN_2468
PBS lyase HEAT-like repeat/cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF03130.
 
    0.575
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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