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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5197Thioredoxin domain protein; Identified by match to protein family HMM PF01323. (272 aa)    
Predicted Functional Partners:
nhaA-2
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
 
      0.808
truD-2
tRNA pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.786
MXAN_5196
Hypothetical protein; Identified by Glimmer2; putative.
       0.782
MXAN_6339
Vitamin K epoxide reductase family/thioredoxin domain protein; Identified by match to protein family HMM PF01323; match to protein family HMM PF07884.
  
     0.756
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
 
      0.648
MXAN_0289
Putative membrane protein; Identified by similarity to GB:AAK22204.1.
  
 
 0.570
MXAN_6156
Cytochrome c biogenesis protein/thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM PF02683.
  
 
 0.492
ansA
L-asparaginase, type I; Identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519.
       0.473
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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