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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
socASocA oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to PIR:A55208; match to protein family HMM PF00106. (248 aa)    
Predicted Functional Partners:
MXAN_5983
Identified by match to protein family HMM PF01596.
 
  
 
 0.905
socA3
Transcriptional regulator SocA3; Identified by match to protein family HMM PF00440.
 
   
 0.900
socA2
FrdD homolog SocA2; Identified by similarity to SP:P30743; similarity to PIR:B55208; match to protein family HMM PF00893.
     
 0.884
fabF
Beta-ketoacyl-acyl carrier protein synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.760
MXAN_6395
Putative 3-oxoacyl-acyl carrier protein synthase; Identified by similarity to PDB:1J3N_A.0; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.760
MXAN_6396
Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.760
fabF-2
3-oxoacyl-(acyl-carrier-protein) synthase II; Identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.760
MXAN_6401
Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.760
MXAN_0499
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.759
MXAN_3965
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
 
   0.755
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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