STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5685Hypothetical protein; Identified by Glimmer2; putative. (275 aa)    
Predicted Functional Partners:
MXAN_5684
Putative lipoprotein; Identified by match to protein family HMM TIGR02722.
       0.746
MXAN_5686
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.742
MXAN_5683
Putative lipoprotein.
       0.716
MXAN_5681
Putative SAM-dependent methyltransferase.
       0.629
MXAN_5682
Metal cation transporter, zinc (Zn2+)-iron (Fe2+) permease (ZIP) family; Identified by match to protein family HMM PF02535.
       0.629
MXAN_5680
Putative sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158.
       0.492
MXAN_5687
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
       0.484
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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