STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5801Di-haem cytochrome-c peroxidase; Identified by match to protein family HMM PF03150. (324 aa)    
Predicted Functional Partners:
MXAN_5800
Bacterial pre-peptidase C-terminal domain protein; Identified by match to protein family HMM PF01833; match to protein family HMM PF04151.
 
  
 0.705
MXAN_1351
Conserved domain protein; Identified by similarity to GB:AAM29910.1; match to protein family HMM TIGR02276.
 
 
 0.640
MXAN_0976
Putative lipoprotein.
 
     0.611
MXAN_5799
Rhs family protein; Identified by match to protein family HMM PF01344; match to protein family HMM PF05593; match to protein family HMM PF07646; match to protein family HMM TIGR01643.
 
     0.606
ccoNO
Cytochrome c oxidase, cbb3-type, subunit I/II; Identified by match to protein family HMM PF00115; match to protein family HMM PF02433; match to protein family HMM TIGR00780; match to protein family HMM TIGR00781; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.542
MXAN_6146
Bacterial Ig-like domain (group 2) protein; Identified by match to protein family HMM PF02368.
 
 
 0.415
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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