STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_5977Conserved hypothetical protein; Identified by match to protein family HMM PF04828. (133 aa)    
Predicted Functional Partners:
MXAN_5978
Putative phosphonate-binding protein.
       0.697
MXAN_5979
Hypothetical protein; Identified by Glimmer2; putative.
       0.683
ttcA
Conserved hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
       0.683
MXAN_0089
Glutathione S-transferase domain protein; Identified by match to protein family HMM PF02798.
  
    0.579
MXAN_2164
Conserved hypothetical protein; Identified by similarity to GB:CAD18699.1.
  
     0.565
MXAN_5981
Putative ribonuclease D; Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.
       0.496
MXAN_5982
Peptidase, M1 (aminopeptidase N) family; Identified by match to protein family HMM PF01433.
       0.496
MXAN_4035
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
  
     0.455
MXAN_0874
Glutathione S-transferase domain protein; Identified by match to protein family HMM PF02798.
 
     0.434
MXAN_1744
Identified by match to protein family HMM PF00305; match to protein family HMM PF01477.
  
     0.410
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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