dpbF protein (Myxococcus xanthus) - STRING interaction network

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

dpbF

DNA polymerase domain protein. (304 aa)

Predicted Functional Partners:

polA

0.861

MXAN_0615

0.841

MXAN_6074

0.841

MXAN_0335

0.805

MXAN_2757

0.803

xth

0.771

xth-2

0.771

MXAN_1073

0.765

ahpD

0.634

dnaN

0.621

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0335	MXAN_0615	MXAN_0335	MXAN_0615	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	0.635
MXAN_0335	MXAN_6074	MXAN_0335	MXAN_6074	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068; match to protein family HMM PF04675; match to protein family HMM PF04679.	0.635
MXAN_0335	dnaN	MXAN_0335	MXAN_0236	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.954
MXAN_0335	dpbF	MXAN_0335	MXAN_5997	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	DNA polymerase domain protein.	0.805
MXAN_0335	polA	MXAN_0335	MXAN_3109	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.488
MXAN_0335	xth	MXAN_0335	MXAN_3970	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.	0.653
MXAN_0335	xth-2	MXAN_0335	MXAN_5178	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.	0.653
MXAN_0615	MXAN_0335	MXAN_0615	MXAN_0335	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	0.635
MXAN_0615	MXAN_6074	MXAN_0615	MXAN_6074	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068; match to protein family HMM PF04675; match to protein family HMM PF04679.	0.900
MXAN_0615	dnaN	MXAN_0615	MXAN_0236	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.929
MXAN_0615	dpbF	MXAN_0615	MXAN_5997	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	DNA polymerase domain protein.	0.841
MXAN_0615	polA	MXAN_0615	MXAN_3109	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.783
MXAN_0615	xth	MXAN_0615	MXAN_3970	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.	0.604
MXAN_0615	xth-2	MXAN_0615	MXAN_5178	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.	0.604
MXAN_1073	ahpD	MXAN_1073	MXAN_1563	Hsp33 family protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	Putative alkyl hydroperoxide reductase D; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.	0.641
MXAN_1073	dpbF	MXAN_1073	MXAN_5997	Hsp33 family protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	DNA polymerase domain protein.	0.765
MXAN_2757	dpbF	MXAN_2757	MXAN_5997	DNA polymerase IV, X family/PHP domain protein; Identified by match to protein family HMM PF02811.	DNA polymerase domain protein.	0.803
MXAN_6074	MXAN_0335	MXAN_6074	MXAN_0335	DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068; match to protein family HMM PF04675; match to protein family HMM PF04679.	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	0.635
MXAN_6074	MXAN_0615	MXAN_6074	MXAN_0615	DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068; match to protein family HMM PF04675; match to protein family HMM PF04679.	DNA ligase, ATP-dependent; Identified by similarity to SP:P44121; match to protein family HMM PF01068.	0.900
MXAN_6074	dnaN	MXAN_6074	MXAN_0236	DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068; match to protein family HMM PF04675; match to protein family HMM PF04679.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.929