aroF-2 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

aroF-2

Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361. (341 aa)

Predicted Functional Partners:

MXAN_3521

0.991

pheA

0.960

MXAN_3219

0.919

MXAN_3220

0.913

aroF

0.905

MXAN_3642

0.900

trpC

0.818

trpA

0.814

trpD

0.810

trpF

0.796

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_3219	MXAN_3220	MXAN_3219	MXAN_3220	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	0.825
MXAN_3219	MXAN_3521	MXAN_3219	MXAN_3521	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	0.989
MXAN_3219	MXAN_3642	MXAN_3219	MXAN_3642	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	3-deoxy-7-phosphoheptulonate synthase; Identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358.	0.900
MXAN_3219	aroF	MXAN_3219	MXAN_3526	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.	0.917
MXAN_3219	aroF-2	MXAN_3219	MXAN_6061	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.	0.919
MXAN_3219	pheA	MXAN_3219	MXAN_3221	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842.	0.862
MXAN_3220	MXAN_3219	MXAN_3220	MXAN_3219	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	0.825
MXAN_3220	MXAN_3521	MXAN_3220	MXAN_3521	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	0.448
MXAN_3220	aroF	MXAN_3220	MXAN_3526	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.	0.913
MXAN_3220	aroF-2	MXAN_3220	MXAN_6061	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.	0.913
MXAN_3220	pheA	MXAN_3220	MXAN_3221	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842.	0.984
MXAN_3220	trpA	MXAN_3220	MXAN_6066	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.	0.483
MXAN_3220	trpC	MXAN_3220	MXAN_6063	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Indole-3-glycerol phosphate synthase; Identified by similarity to SP:P20577; match to protein family HMM PF00218; Belongs to the TrpC family.	0.537
MXAN_3220	trpD	MXAN_3220	MXAN_6062	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).	0.535
MXAN_3220	trpF	MXAN_3220	MXAN_6064	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	N-(5'phosphoribosyl)anthranilate isomerase; Identified by match to protein family HMM PF00697; Belongs to the TrpF family.	0.555
MXAN_3521	MXAN_3219	MXAN_3521	MXAN_3219	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	Putative phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793.	0.989
MXAN_3521	MXAN_3220	MXAN_3521	MXAN_3220	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842.	0.448
MXAN_3521	MXAN_3642	MXAN_3521	MXAN_3642	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	3-deoxy-7-phosphoheptulonate synthase; Identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358.	0.938
MXAN_3521	aroF	MXAN_3521	MXAN_3526	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.	0.990
MXAN_3521	aroF-2	MXAN_3521	MXAN_6061	Putative 3-dehydroquinate synthase; Identified by match to protein family HMM PF01761.	Phospho-2-dehydro-3-deoxyheptonate aldolase; Identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361.	0.991