STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coxB-2Cytochrome c oxidase, subunit II; Identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM TIGR02866. (348 aa)    
Predicted Functional Partners:
ctaD-2
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 0.996
coxC-2
Cytochrome c oxidase, subunit III.
 
 0.996
coxC
Cytochrome c oxidase, subunit III.
 
 0.984
ctaD
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 0.984
MXAN_6085
Conserved hypothetical protein; Identified by similarity to GB:CAC08530.1.
 
 
 0.983
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.935
MXAN_6082
Cytochrome c family protein.
 
 
 0.909
coxB
Cytochrome c oxidase, subunit II; Identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM TIGR02866.
  
  
 
0.903
MXAN_1081
NADH dehydrogenase I, M subunit; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
  
 
 0.900
MXAN_6081
Conserved hypothetical protein.
 
 
 0.898
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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