MXAN_6093 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_6093

Hypothetical protein; Identified by Glimmer2; putative. (367 aa)

Predicted Functional Partners:

MXAN_6091

0.773

MXAN_6092

0.773

MXAN_4569

0.716

MXAN_2706

0.708

MXAN_1282

0.707

MXAN_6094

0.705

MXAN_5868

0.698

MXAN_5975

0.695

MXAN_2908

0.684

MXAN_6095

0.677

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_1282	MXAN_6093	Putative 3-isopropylmalate dehydratase, large subunit; Identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR02087.	Hypothetical protein; Identified by Glimmer2; putative.	0.707
MXAN_2706	MXAN_2908	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	Putative lipoprotein.	0.772
MXAN_2706	MXAN_4569	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	Identified by match to protein family HMM PF00657.	0.658
MXAN_2706	MXAN_5868	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.717
MXAN_2706	MXAN_5975	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	Putative lipoprotein.	0.770
MXAN_2706	MXAN_6093	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	Hypothetical protein; Identified by Glimmer2; putative.	0.708
MXAN_2908	MXAN_2706	Putative lipoprotein.	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	0.772
MXAN_2908	MXAN_4569	Putative lipoprotein.	Identified by match to protein family HMM PF00657.	0.719
MXAN_2908	MXAN_5868	Putative lipoprotein.	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.697
MXAN_2908	MXAN_6093	Putative lipoprotein.	Hypothetical protein; Identified by Glimmer2; putative.	0.684
MXAN_4569	MXAN_2706	Identified by match to protein family HMM PF00657.	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	0.658
MXAN_4569	MXAN_2908	Identified by match to protein family HMM PF00657.	Putative lipoprotein.	0.719
MXAN_4569	MXAN_5868	Identified by match to protein family HMM PF00657.	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.508
MXAN_4569	MXAN_5975	Identified by match to protein family HMM PF00657.	Putative lipoprotein.	0.657
MXAN_4569	MXAN_6093	Identified by match to protein family HMM PF00657.	Hypothetical protein; Identified by Glimmer2; putative.	0.716
MXAN_5868	MXAN_2706	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Conserved hypothetical protein; Identified by similarity to GB:AAS70461.1; match to protein family HMM PF00561.	0.717
MXAN_5868	MXAN_2908	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Putative lipoprotein.	0.697
MXAN_5868	MXAN_4569	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Identified by match to protein family HMM PF00657.	0.508
MXAN_5868	MXAN_5975	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Putative lipoprotein.	0.687
MXAN_5868	MXAN_6093	Identified by match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Hypothetical protein; Identified by Glimmer2; putative.	0.698