MXAN_6168 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_6168

Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723. (614 aa)

Predicted Functional Partners:

otsAB

0.807

MXAN_6169

0.488

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_6168	MXAN_6169	MXAN_6168	MXAN_6169	Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723.	Oxidoreductase, zinc-binding dehydrogenase family.	0.488
MXAN_6168	otsAB	MXAN_6168	MXAN_1192	Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723.	Alpha,alpha-trehalose-phosphate synthase/trehalose-phosphatase; Identified by match to protein family HMM PF00982; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484.	0.807
MXAN_6169	MXAN_6168	MXAN_6169	MXAN_6168	Oxidoreductase, zinc-binding dehydrogenase family.	Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723.	0.488
otsAB	MXAN_6168	MXAN_1192	MXAN_6168	Alpha,alpha-trehalose-phosphate synthase/trehalose-phosphatase; Identified by match to protein family HMM PF00982; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484.	Glycosyl hydrolase, family 15; Identified by match to protein family HMM PF00723.	0.807