STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_6388Lanthionine synthetase C family protein. (1089 aa)    
Predicted Functional Partners:
MXAN_6389
Hypothetical protein; Identified by Glimmer2; putative.
       0.615
MXAN_1237
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.593
MXAN_2853
Putative lantibiotic ABC transporter, permease/ATP-binding protein; Identified by similarity to SP:P22520; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412.
 
   
 0.565
MXAN_4492
Conserved hypothetical protein; Identified by similarity to GB:AAR34300.1.
  
     0.539
MXAN_6387
Conserved hypothetical protein; Identified by similarity to GB:BAC52388.1.
  
    0.531
MXAN_4534
Chitinase, class I; Identified by match to protein family HMM PF00182; match to protein family HMM PF00652.
  
     0.511
MXAN_4931
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.508
MXAN_4500
Conserved domain protein; Identified by similarity to GB:BAB52826.1.
  
     0.460
MXAN_5968
Identified by match to protein family HMM PF04446.
  
    0.448
MXAN_4504
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02243.
  
     0.439
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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