STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tonB-3Ferric siderophore transporter, periplasmic energy transduction protein TonB; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. (268 aa)    
Predicted Functional Partners:
MXAN_6484
Transport energizing protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.908
MXAN_6483
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
 
 0.877
MXAN_6845
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
 
 
 0.835
MXAN_1316
Putative tonB dependent receptor; Identified by similarity to GB:AAB47566.2; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.802
MXAN_1448
Transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
  
 
 0.741
MXAN_6579
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.714
tolR
Transport energizing protein TolR; Also known as adventurous gliding motility protein AglV; identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801.
  
 
 0.698
MXAN_1450
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
 
 
 0.676
MXAN_0819
Transport energizing protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.668
MXAN_4559
Putative tonB dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.666
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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