STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_6665Putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to GB:CAE78183.1; match to protein family HMM PF01094. (401 aa)    
Predicted Functional Partners:
livH
Branched-chain amino acid ABC transporter, permease protein LivH; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
MXAN_6663
Putative branched chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
livG
Branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
 
 0.996
MXAN_6661
Putative branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to GB:AAR36781.1; match to protein family HMM PF00005.
 
 
 0.994
MXAN_1262
Identified by match to protein family HMM PF01094.
  
  
 
0.920
MXAN_1151
Identified by match to protein family HMM PF01094.
  
  
 
0.901
MXAN_2925
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
      
 0.541
MXAN_5057
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
      
 0.541
MXAN_6988
Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.525
MXAN_2401
Modification methylase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
      
 0.514
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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