STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
difBDifB protein; Identified by similarity to GB:AAC27629.1. (245 aa)    
Predicted Functional Partners:
difA
Methyl-accepting chemotaxis protein DifA; Identified by similarity to GB:AAC27628.1; match to protein family HMM PF00015; match to protein family HMM PF00672.
  
  
 0.845
difC
Fibril biogenesis regulator DifC; Identified by similarity to GB:AAL56590.1; match to protein family HMM PF01584.
  
  
 0.786
difD
Fibril biogenesis regulator DifD; Identified by similarity to GB:AAC27631.1; match to protein family HMM PF00072.
     
 0.690
MXAN_6182
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.656
MXAN_5000
SPFH domain/band 7 family.
  
     0.624
MXAN_1317
Putative lipoprotein.
  
     0.608
MXAN_5445
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.583
MXAN_3201
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.582
difE
Histidine kinase DifE; Identified by similarity to GB:AAC27632.2; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194.
     
 0.573
yidC
Inner membrane protein, 60 kDa; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
    
 
 0.573
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.