STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_6904Conserved domain protein. (565 aa)    
Predicted Functional Partners:
gidA
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
 
 0.799
MXAN_1267
Conserved hypothetical protein; Identified by similarity to GB:CAB91133.1.
  
    0.742
MXAN_4396
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.734
MXAN_6423
Putative membrane protein.
  
     0.721
MXAN_4440
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.711
MXAN_1005
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
    0.706
MXAN_6419
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.706
MXAN_5837
Bacterial Ig-like domain (group 1)/fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF02369.
  
    0.699
MXAN_2186
B12 binding domain protein; Identified by match to protein family HMM PF02310.
  
    0.674
MXAN_4864
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.666
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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