STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_7070Conserved hypothetical protein; Identified by similarity to GB:CAD31267.1. (611 aa)    
Predicted Functional Partners:
topB
DNA topoisomerase III/ATP-dependent DNA helicase, RecQ family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR00614; match to protein family HMM TIGR01056.
 
 0.945
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.942
MXAN_0816
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.737
sbcC
Nuclease SbcCD, C subunit; Identified by similarity to SP:P13458.
  
 0.737
MXAN_2707
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.737
MXAN_4513
Conserved hypothetical protein; Identified by similarity to GB:CAE33539.1.
  
 0.737
MXAN_5456
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.628
MXAN_1179
Conserved hypothetical protein.
  
     0.592
MXAN_0255
Peptidase homolog, M20 family; Lacks one of five conserved zinc-binding residues characteristic of the M20 family, so peptidase activity is questionable; identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
 
     0.582
MXAN_5795
Exonuclease; Identified by match to protein family HMM PF00929.
  
 0.563
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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